Publications where Analysis Engine was used

Biswas S, Biswas I. Complete Genome Sequence of Streptococcus mutans Strain MD, Which Produces Highly Potent Mutacins. Microbiol Resour Announc. 2020 Aug 13;9(33):e00616-20. doi: 10.1128/MRA.00616-20. PMID:32817148

Lebov JF, Mattick J, Libro S, Sparklin BC, Chung M, Bromley RE, Nadendla S, Zhao X, Ott S, Sadzewicz L, Tallon LJ, Michalski ML, Foster JM, Dunning Hotopp JC. Complete Genome Sequence of wBp, the Wolbachia Endosymbiont of Brugia pahangi FR3. Microbiol Resour Announc. 2020 Jul 2;9(27):e00480-20. doi: 10.1128/MRA.00480-20. PMID:32616636

Biswas I. Complete Genome Sequences of Two Mutacin-Producing Streptococcus mutans Strains, T8 and UA140. Microbiol Resour Announc. 2020 Jun 11;9(24):e00469-20. doi: 10.1128/MRA.00469-20. PMID:32527777

Hernandes RT, Hazen TH, Dos Santos LF, Richter TKS, Michalski JM, Rasko DA. Comparative genomic analysis provides insight into the phylogeny and virulence of atypical enteropathogenic Escherichia coli strains from Brazil. PLoS Negl Trop Dis. 2020 Jun 1;14(6):e0008373. doi: 10.1371/journal.pntd.0008373. eCollection 2020 Jun. PMID:32479541

Holm JB, France MT, Ma B, McComb E, Robinson CK, Mehta A, Tallon LJ, Brotman RM, Ravel J. Comparative Metagenome-Assembled Genome Analysis of "Candidatus Lachnocurva vaginae", Formerly Known as Bacterial Vaginosis-Associated Bacterium-1 (BVAB1). Front Cell Infect Microbiol. 2020 Mar 31;10:117. doi: 10.3389/fcimb.2020.00117. eCollection 2020. PMID:32296647

Dewey ED, Stokes LM, Burchell BM, Shaffer KN, Huntington AM, Baker JM, Nadendla S, Giglio MG, Bender KS, Touchman JW, Blankenship RE, Madigan MT, Sattley WM. Analysis of the Complete Genome of the Alkaliphilic and Phototrophic Firmicute Heliorestis convoluta Strain HH(T). Microorganisms. 2020 Feb 25;8(3):313. doi: 10.3390/microorganisms8030313. PMID:32106460

Rasko DA, Del Canto F, Luo Q, Fleckenstein JM, Vidal R, Hazen TH. Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile. PLoS Negl Trop Dis. 2019 Nov 20;13(11):e0007828. doi: 10.1371/journal.pntd.0007828. eCollection 2019 Nov. PMID:31747410

Gasser MT, Chung M, Bromley RE, Nadendla S, Dunning Hotopp JC. Complete Genome Sequence of wAna, the Wolbachia Endosymbiont of Drosophila ananassae. Microbiol Resour Announc. 2019 Oct 24;8(43):e01136-19. doi: 10.1128/MRA.01136-19. PMID:31649084

Shao S, van Heusden GPH, Hooykaas PJJ. Complete Sequence of Succinamopine Ti-Plasmid pTiEU6 Reveals Its Evolutionary Relatedness with Nopaline-Type Ti-Plasmids. Genome Biol Evol. 2019 Sep 1;11(9):2480-2491. doi: 10.1093/gbe/evz173. PMID:31386108

Kuzmanović N, Puławska J. Evolutionary Relatedness and Classification of Tumor-Inducing and Opine-Catabolic Plasmids in Three Rhizobium rhizogenes Strains Isolated from the Same Crown Gall Tumor. Genome Biol Evol. 2019 Jun 1;11(6):1525-1540. doi: 10.1093/gbe/evz091. PMID:31028704

Krzyżanowska DM, Maciąg T, Ossowicki A, Rajewska M, Kaczyński Z, Czerwicka M, Rąbalski Ł, Czaplewska P, Jafra S. Ochrobactrum quorumnocens sp. nov., a quorum quenching bacterium from the potato rhizosphere, and comparative genome analysis with related type strains. PLoS One. 2019 Jan 22;14(1):e0210874. doi: 10.1371/journal.pone.0210874. eCollection 2019. PMID:30668584

Hazen TH, Nagaraj S, Sen S, Permala-Booth J, Del Canto F, Vidal R, Barry EM, Bitoun JP, Chen WH, Tennant SM, Rasko DA. Genome and Functional Characterization of Colonization Factor Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only Enterotoxigenic Escherichia coli Reveals Lineage and Geographic Variation. mSystems. 2019 Jan 15;4(1):e00329-18. doi: 10.1128/mSystems.00329-18. eCollection 2019 Jan-Feb. PMID:30944874

Richter TKS, Hazen TH, Lam D, Coles CL, Seidman JC, You Y, Silbergeld EK, Fraser CM, Rasko DA. Temporal Variability of Escherichia coli Diversity in the Gastrointestinal Tracts of Tanzanian Children with and without Exposure to Antibiotics. mSphere. 2018 Nov 7;3(6):e00558-18. doi: 10.1128/mSphere.00558-18. PMID:30404930

Estes AM, Hearn DJ, Nadendla S, Pierson EA, Dunning Hotopp JC. Draft Genome Sequence of Erwinia dacicola, a Dominant Endosymbiont of Olive Flies. Microbiol Resour Announc. 2018 Sep 13;7(10):e01067-18. doi: 10.1128/MRA.01067-18. eCollection 2018 Sep. PMID:30533624

Estes AM, Hearn DJ, Nadendla S, Pierson EA, Dunning Hotopp JC. Draft Genome Sequence of Enterobacter sp. Strain OLF, a Colonizer of Olive Flies. Microbiol Resour Announc. 2018 Sep 6;7(9):e01068-18. doi: 10.1128/MRA.01068-18. eCollection 2018 Sep. PMID:30533936

Richter TKS, Michalski JM, Zanetti L, Tennant SM, Chen WH, Rasko DA. Responses of the Human Gut Escherichia coli Population to Pathogen and Antibiotic Disturbances. mSystems. 2018 Jul 24;3(4):e00047-18. doi: 10.1128/mSystems.00047-18. eCollection 2018 Jul-Aug. PMID:30057943

Sánchez-Cañizares C, Jorrín B, Durán D, Nadendla S, Albareda M, Rubio-Sanz L, Lanza M, González-Guerrero M, Prieto RI, Brito B, Giglio MG, Rey L, Ruiz-Argüeso T, Palacios JM, Imperial J. Genomic Diversity in the Endosymbiotic Bacterium Rhizobium leguminosarum. Genes (Basel). 2018 Jan 24;9(2):60. doi: 10.3390/genes9020060. PMID:29364862

Gašić K, Kuzmanović N, Ivanović M, Prokić A, Šević M, Obradović A. Complete Genome of the Xanthomonas euvesicatoria Specific Bacteriophage KΦ1, Its Survival and Potential in Control of Pepper Bacterial Spot. Front Microbiol. 2018 Aug 29;9:2021. doi: 10.3389/fmicb.2018.02021. eCollection 2018. PMID:30210484

Chung M, Small ST, Serre D, Zimmerman PA, Dunning Hotopp JC. Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb. Pathog Dis. 2017 Dec 29;75(9):ftx115. doi: 10.1093/femspd/ftx115. PMID:29099918

Mongodin EF, Hittle LL, Nadendla S, Brinkman CC, Xiong Y, Bromberg JS. Complete Genome Sequence of a Strain of Bifidobacterium pseudolongum Isolated from Mouse Feces and Associated with Improved Organ Transplant Outcome. Genome Announc. 2017 Oct 5;5(40):e01089-17. doi: 10.1128/genomeA.01089-17. PMID:28983003

Tettelin H, Hooven TA, Zhao X, Su Q, Sadzewicz L, Tallon LJ, Fraser CM, Ratner AJ. Whole-Genome Sequences of Bacteremia Isolates of Bordetella holmesii. Genome Announc. 2017 Sep 28;5(39):e01023-17. doi: 10.1128/genomeA.01023-17. PMID:28963213

Chen G, Murdoch RW, Mack EE, Seger ES, Löffler FE. Complete Genome Sequence of Dehalobacterium formicoaceticum Strain DMC, a Strictly Anaerobic Dichloromethane-Degrading Bacterium. Genome Announc. 2017 Sep 14;5(37):e00897-17. doi: 10.1128/genomeA.00897-17. PMID:28912314

Hazen TH, Michalski J, Nagaraj S, Okeke IN, Rasko DA. Characterization of a Large Antibiotic Resistance Plasmid Found in Enteropathogenic Escherichia coli Strain B171 and Its Relatedness to Plasmids of Diverse E. coli and Shigella Strains. Antimicrob Agents Chemother. 2017 Aug 24;61(9):e00995-17. doi: 10.1128/AAC.00995-17. Print 2017 Sep. PMID:28674052

Hazen TH, Daugherty SC, Shetty AC, Nataro JP, Rasko DA. Transcriptional Variation of Diverse Enteropathogenic Escherichia coli Isolates under Virulence-Inducing Conditions. mSystems. 2017 Jul 25;2(4):e00024-17. doi: 10.1128/mSystems.00024-17. eCollection 2017 Jul-Aug. PMID:28766584

Hazen TH, Michalski J, Luo Q, Shetty AC, Daugherty SC, Fleckenstein JM, Rasko DA. Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli. Sci Rep. 2017 Jun 14;7(1):3513. doi: 10.1038/s41598-017-03489-z. PMID:28615618

Lin M, Bachman K, Cheng Z, Daugherty SC, Nagaraj S, Sengamalay N, Ott S, Godinez A, Tallon LJ, Sadzewicz L, Fraser C, Dunning Hotopp JC, Rikihisa Y. Analysis of complete genome sequence and major surface antigens of Neorickettsia helminthoeca, causative agent of salmon poisoning disease. Microb Biotechnol. 2017 Jul;10(4):933-957. doi: 10.1111/1751-7915.12731. Epub 2017 Jun 6. PMID:28585301

Panda A, Nagaraj S, Zhao X, Tettelin H, DeTolla LJ. Complete Genome Sequences of Mycobacterium kansasii Strains Isolated from Rhesus Macaques. Genome Announc. 2017 Apr 20;5(16):e00187-17. doi: 10.1128/genomeA.00187-17. PMID:28428296

Mishra NN, Tran TT, Seepersaud R, Garcia-de-la-Maria C, Faull K, Yoon A, Proctor R, Miro JM, Rybak MJ, Bayer AS, Arias CA, Sullam PM. Perturbations of Phosphatidate Cytidylyltransferase (CdsA) Mediate Daptomycin Resistance in Streptococcus mitis/oralis by a Novel Mechanism. Antimicrob Agents Chemother. 2017 Mar 24;61(4):e02435-16. doi: 10.1128/AAC.02435-16. Print 2017 Apr. PMID:28115347

Baker JM, Riester CJ, Skinner BM, Newell AW, Swingley WD, Madigan MT, Jung DO, Asao M, Chen M, Loughlin PC, Pan H, Lin Y, Li Y, Shaw J, Prado M, Sherman C, Tang JK, Blankenship RE, Zhao T, Touchman JW, Sattley WM. Genome Sequence of Rhodoferax antarcticus ANT.BR(T); A Psychrophilic Purple Nonsulfur Bacterium from an Antarctic Microbial Mat. Microorganisms. 2017 Feb 21;5(1):8. doi: 10.3390/microorganisms5010008. PMID:28230808

Byrd AL, Deming C, Cassidy SKB, Harrison OJ, Ng WI, Conlan S; NISC Comparative Sequencing Program, Belkaid Y, Segre JA, Kong HH. Staphylococcus aureus and Staphylococcus epidermidis strain diversity underlying pediatric atopic dermatitis. Sci Transl Med. 2017 Jul 5;9(397):eaal4651. doi: 10.1126/scitranslmed.aal4651. PMID:28679656

Cusick KD, Dale JR, Little BJ, Biffinger JC. Draft Genome Sequences of Four Alteromonas macleodii Strains Isolated from Copper Coupons and Grown Long-Term at Elevated Copper Levels. Genome Announc. 2016 Nov 23;4(6):e01311-16. doi: 10.1128/genomeA.01311-16. PMID:27881542

Marques LM, Rezende IS, Barbosa MS, Guimarães AM, Martins HB, Campos GB, do Nascimento NC, Dos Santos AP, Amorim AT, Santos VM, Farias ST, Barrence FÂ, de Souza LM, Buzinhani M, Arana-Chavez VE, Zenteno ME, Amarante-Mendes GP, Messick JB, Timenetsky J. Ureaplasma diversum Genome Provides New Insights about the Interaction of the Surface Molecules of This Bacterium with the Host. PLoS One. 2016 Sep 7;11(9):e0161926. doi: 10.1371/journal.pone.0161926. eCollection 2016. PMID:27603136

Sahni RD, Amalanathan R, Devanga Ragupathi NK, Mathai J, Veeraraghavan B, Biswas I. Complete Genome Sequence of Serratia marcescens U36365, a Green Pigment-Producing Strain Isolated from a Patient with Urinary Tract Infection. Genome Announc. 2016 Aug 11;4(4):e00837-16. doi: 10.1128/genomeA.00837-16. PMID:27516523

Hazen TH, Leonard SR, Lampel KA, Lacher DW, Maurelli AT, Rasko DA. Investigating the Relatedness of Enteroinvasive Escherichia coli to Other E. coli and Shigella Isolates by Using Comparative Genomics. Infect Immun. 2016 Jul 21;84(8):2362-2371. doi: 10.1128/IAI.00350-16. Print 2016 Aug. PMID:27271741

Lindsey AR, Werren JH, Richards S, Stouthamer R. Comparative Genomics of a Parthenogenesis-Inducing Wolbachia Symbiont. G3 (Bethesda). 2016 Jul 7;6(7):2113-23. doi: 10.1534/g3.116.028449. PMID:27194801

Chevallereau A, Blasdel BG, De Smet J, Monot M, Zimmermann M, Kogadeeva M, Sauer U, Jorth P, Whiteley M, Debarbieux L, Lavigne R. Next-Generation "-omics" Approaches Reveal a Massive Alteration of Host RNA Metabolism during Bacteriophage Infection of Pseudomonas aeruginosa. PLoS Genet. 2016 Jul 5;12(7):e1006134. doi: 10.1371/journal.pgen.1006134. eCollection 2016 Jul. PMID:27380413

Newton IL, Clark ME, Kent BN, Bordenstein SR, Qu J, Richards S, Kelkar YD, Werren JH. Comparative Genomics of Two Closely Related Wolbachia with Different Reproductive Effects on Hosts. Genome Biol Evol. 2016 Jun 3;8(5):1526-42. doi: 10.1093/gbe/evw096. PMID:27189996

Oh J, Byrd AL, Park M; NISC Comparative Sequencing Program, Kong HH, Segre JA. Temporal Stability of the Human Skin Microbiome. Cell. 2016 May 5;165(4):854-66. doi: 10.1016/j.cell.2016.04.008. PMID:27153496

Fischer A, Santana-Cruz I, Wambua L, Olds C, Midega C, Dickinson M, Kawicha P, Khan Z, Masiga D, Jores J, Schneider B. Draft Genome Sequence of "Candidatus Phytoplasma oryzae" Strain Mbita1, the Causative Agent of Napier Grass Stunt Disease in Kenya. Genome Announc. 2016 Apr 21;4(2):e00297-16. doi: 10.1128/genomeA.00297-16. PMID:27103722

La Torre A, Bassi D, Zotta T, Orrù L, Lamontanara A, Cocconcelli PS. Draft Genome Sequence of Clostridium sporogenes Strain UC9000 Isolated from Raw Milk. Genome Announc. 2016 Apr 14;4(2):e00244-16. doi: 10.1128/genomeA.00244-16. PMID:27081128

Kania DA, Hazen TH, Hossain A, Nataro JP, Rasko DA. Genome diversity of Shigella boydii. Pathog Dis. 2016 Jun;74(4):ftw027. doi: 10.1093/femspd/ftw027. Epub 2016 Apr 6. PMID:27056949

Benjak A, Uplekar S, Zhang M, Piton J, Cole ST, Sala C. Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b. BMC Genomics. 2016 Mar 5;17:190. doi: 10.1186/s12864-016-2528-2. PMID:26944551

Mehari YT, Arivett BA, Farone AL, Gunderson JH, Farone MB. Draft Genome Sequences of Two Novel Amoeba-Resistant Intranuclear Bacteria, "Candidatus Berkiella cookevillensis" and "Candidatus Berkiella aquae". Genome Announc. 2016 Feb 18;4(1):e01732-15. doi: 10.1128/genomeA.01732-15. PMID:26893424

Tsai YC, Conlan S, Deming C; NISC Comparative Sequencing Program, Segre JA, Kong HH, Korlach J, Oh J. Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing. mBio. 2016 Feb 9;7(1):e01948-15. doi: 10.1128/mBio.01948-15. PMID:26861018

Rafiq Z, Sam N, Vaidyanathan R. Whole genome sequence of Klebsiella pneumoniae U25, a hypermucoviscous, multidrug resistant, biofilm producing isolate from India. Mem Inst Oswaldo Cruz. 2016 Feb;111(2):144-6. doi: 10.1590/0074-02760150423. PMID:26872343

Hazen TH, Donnenberg MS, Panchalingam S, Antonio M, Hossain A, Mandomando I, Ochieng JB, Ramamurthy T, Tamboura B, Qureshi S, Quadri F, Zaidi A, Kotloff KL, Levine MM, Barry EM, Kaper JB, Rasko DA, Nataro JP. Genomic diversity of EPEC associated with clinical presentations of differing severity. Nat Microbiol. 2016 Jan 18;1:15014. doi: 10.1038/nmicrobiol.2015.14. PMID:27571975

Gay NR, Fleming E, Oh J. Draft Genome Sequence of Cloacibacterium normanense NRS-1 Isolated from Municipal Wastewater. Genome Announc. 2016 Dec 15;4(6):e01397-16. doi: 10.1128/genomeA.01397-16. PMID:27979947

Krzyżanowska DM, Ossowicki A, Rajewska M, Maciąg T, Jabłońska M, Obuchowski M, Heeb S, Jafra S. When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens. Front Microbiol. 2016 May 26;7:782. doi: 10.3389/fmicb.2016.00782. eCollection 2016. PMID:27303376

Xu Y, Nagy A, Yan X, Haley BJ, Kim SW, Liu NT, Nou X. Genome Sequences of Ralstonia insidiosa Type Strain ATCC 49129 and Strain FC1138, a Strong Biofilm Producer Isolated from a Fresh-Cut Produce-Processing Plant. Genome Announc. 2016 Aug 18;4(4):e00847-16. doi: 10.1128/genomeA.00847-16. PMID:27540070

Song C, Schmidt R, de Jager V, Krzyzanowska D, Jongedijk E, Cankar K, Beekwilder J, van Veen A, de Boer W, van Veen JA, Garbeva P. Exploring the genomic traits of fungus-feeding bacterial genus Collimonas. BMC Genomics. 2015 Dec 24;16:1103. doi: 10.1186/s12864-015-2289-3. PMID:26704531

Hang J, Mullins KE, Clifford RJ, Onmus-Leone F, Yang Y, Jiang J, Leguia M, Kasper MR, Maguiña C, Lesho EP, Jarman RG, Richards AL, Blazes D. Complete Genome Sequence of Bartonella ancashensis Strain 20.00, Isolated from the Blood of a Patient with Verruga Peruana. Genome Announc. 2015 Nov 5;3(6):e01217-15. doi: 10.1128/genomeA.01217-15. PMID:26543106

Fischer A, Santana-Cruz I, Hegerman J, Gourlé H, Schieck E, Lambert M, Nadendla S, Wesonga H, Miller RA, Vashee S, Weber J, Meens J, Frey J, Jores J. High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237. Stand Genomic Sci. 2015 Oct 29;10:89. doi: 10.1186/s40793-015-0067-0. eCollection 2015. PMID:26516405

Dailey FE, McGraw JE, Jensen BJ, Bishop SS, Lokken JP, Dorff KJ, Ripley MP, Munro JB. The Microbiota of Freshwater Fish and Freshwater Niches Contain Omega-3 Fatty Acid-Producing Shewanella Species. Appl Environ Microbiol. 2015 Oct 23;82(1):218-31. doi: 10.1128/AEM.02266-15. Print 2016 Jan 1. PMID:26497452

Manzella MP, Holmes DE, Rocheleau JM, Chung A, Reguera G, Kashefi K. The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon "Geoglobus ahangari" strain 234(T). Stand Genomic Sci. 2015 Oct 9;10:77. doi: 10.1186/s40793-015-0035-8. eCollection 2015. PMID:26457129

Balaji V, Rajenderan S, Anandan S, Biswas I. Genome Sequences of Two Multidrug-Resistant Acinetobacter baumannii Clinical Strains Isolated from Southern India. Genome Announc. 2015 Sep 10;3(5):e01010-15. doi: 10.1128/genomeA.01010-15. PMID:26358595

Vijaykumar S, Balaji V, Biswas I. Complete Genome Sequence of Acinetobacter baumannii Strain B8300, Which Displays High Twitching Motility. Genome Announc. 2015 Aug 20;3(4):e00956-15. doi: 10.1128/genomeA.00956-15. PMID:26294640

Opazo A, Lopes BS, García P, Domínguez Yévenes M, Lima C, Bello-Toledo H, González-Rocha G, Amyes SG. Draft Genome Sequence of a Multidrug-Resistant Acinetobacter baumannii Strain from Chile. Genome Announc. 2015 Jul 2;3(4):e00687-15. doi: 10.1128/genomeA.00687-15. PMID:26139713

Hazen TH, Daugherty SC, Shetty A, Mahurkar AA, White O, Kaper JB, Rasko DA. RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates. Front Microbiol. 2015 Jun 12;6:569. doi: 10.3389/fmicb.2015.00569. eCollection 2015. PMID:26124752

Sanjar F, Rusconi B, Hazen TH, Koenig SS, Mammel MK, Feng PC, Rasko DA, Eppinger M. Characterization of the pathogenome and phylogenomic classification of enteropathogenic Escherichia coli of the O157:non-H7 serotypes. Pathog Dis. 2015 Jul;73(5):ftv033. doi: 10.1093/femspd/ftv033. Epub 2015 May 10. PMID:25962987

Graupner K, Lackner G, Hertweck C. Genome Sequence of Mushroom Soft-Rot Pathogen Janthinobacterium agaricidamnosum. Genome Announc. 2015 Apr 16;3(2):e00277-15. doi: 10.1128/genomeA.00277-15. PMID:25883287

Williams LE, Wernegreen JJ. Genome evolution in an ancient bacteria-ant symbiosis: parallel gene loss among Blochmannia spanning the origin of the ant tribe Camponotini. PeerJ. 2015 Apr 2;3:e881. doi: 10.7717/peerj.881. eCollection 2015. PMID:25861561

Jima DD, Luce-Fedrow A, Yang Y, Maina AN, Snesrud EC, Otiang E, Njenga K, Jarman RG, Richards AL, Hang J. Whole-Genome Sequence of "Candidatus Rickettsia asemboensis" Strain NMRCii, Isolated from Fleas of Western Kenya. Genome Announc. 2015 Mar 12;3(2):e00018-15. doi: 10.1128/genomeA.00018-15. PMID:25767219

Hooven TA, Randis TM, Daugherty SC, Narechania A, Planet PJ, Tettelin H, Ratner AJ. Complete Genome Sequence of Streptococcus agalactiae CNCTC 10/84, a Hypervirulent Sequence Type 26 Strain. Genome Announc. 2014 Dec 24;2(6):e01338-14. doi: 10.1128/genomeA.01338-14. PMID:25540350

Ioannidis P, Lu Y, Kumar N, Creasy T, Daugherty S, Chibucos MC, Orvis J, Shetty A, Ott S, Flowers M, Sengamalay N, Tallon LJ, Pick L, Dunning Hotopp JC. Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys. BMC Genomics. 2014 Aug 29;15(1):738. doi: 10.1186/1471-2164-15-738. PMID:25168586

Wang Z, Wu M. Complete Genome Sequence of the Endosymbiont of Acanthamoeba Strain UWC8, an Amoeba Endosymbiont Belonging to the "Candidatus Midichloriaceae" Family in Rickettsiales. Genome Announc. 2014 Aug 7;2(4):e00791-14. doi: 10.1128/genomeA.00791-14. PMID:25103769

Krzyzanowska DM, Ossowicki A, Jafra S. Genome Sequence of Pseudomonas sp. Strain P482, a Tomato Rhizosphere Isolate with Broad-Spectrum Antimicrobial Activity. Genome Announc. 2014 Jun 26;2(3):e00394-14. doi: 10.1128/genomeA.00394-14. PMID:24970823

Yeruva L, Myers GS, Spencer N, Creasy HH, Adams NE, Maurelli AT, McChesney GR, Cleves MA, Ravel J, Bowlin A, Rank RG. Early microRNA expression profile as a prognostic biomarker for the development of pelvic inflammatory disease in a mouse model of chlamydial genital infection. mBio. 2014 Jun 24;5(3):e01241-14. doi: 10.1128/mBio.01241-14. PMID:24961692

Donati M, Huot-Creasy H, Humphrys M, Di Paolo M, Di Francesco A, Myers GS. Genome Sequence of Chlamydia suis MD56, Isolated from the Conjunctiva of a Weaned Piglet. Genome Announc. 2014 May 8;2(3):e00425-14. doi: 10.1128/genomeA.00425-14. PMID:24812227

Ketter P, Guentzel MN, Chambers JP, Jorgensen J, Murray CK, Cap AP, Yu JJ, Eppinger M, Arulanandam BP. Genome Sequences of Four Acinetobacter baumannii-A. calcoaceticus Complex Isolates from Combat-Related Infections Sustained in the Middle East. Genome Announc. 2014 Feb 6;2(1):e00026-14. doi: 10.1128/genomeA.00026-14. PMID:24503987

Sanjar F, Hazen TH, Shah SM, Koenig SS, Agrawal S, Daugherty S, Sadzewicz L, Tallon LJ, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Cebula TA, Ravel J, Fraser CM, Rasko DA, Eppinger M. Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States. Genome Announc. 2014 Jan 9;2(1):e01120-13. doi: 10.1128/genomeA.01120-13. PMID:24407635

Toby IT, Widmer J, Dyer DW. Divergence of protein-coding capacity and regulation in the Bacillus cereus sensu lato group. BMC Bioinformatics. 2014;15 Suppl 11(Suppl 11):S8. doi: 10.1186/1471-2105-15-S11-S8. Epub 2014 Oct 21. PMID:25350501

Czajkowski R, Ozymko Z, Zwirowski S, Lojkowska E. Complete genome sequence of a broad-host-range lytic Dickeya spp. bacteriophage Ï•D5. Arch Virol. 2014 Nov;159(11):3153-5. doi: 10.1007/s00705-014-2170-8. Epub 2014 Jul 8. PMID:25000903

Kothari A, Vaughn M, Garcia-Pichel F. Comparative genomic analyses of the cyanobacterium, Lyngbya aestuarii BL J, a powerful hydrogen producer. Front Microbiol. 2013 Dec 11;4:363. doi: 10.3389/fmicb.2013.00363. eCollection 2013. PMID:24376438

Eppinger M, McNair K, Zogaj X, Dinsdale EA, Edwards RA, Klose KE. Draft Genome Sequence of the Fish Pathogen Piscirickettsia salmonis. Genome Announc. 2013 Nov 7;1(6):e00926-13. doi: 10.1128/genomeA.00926-13. PMID:24201203

Duncan SS, Bertoli MT, Kersulyte D, Valk PL, Tamma S, Segal I, McClain MS, Cover TL, Berg DE. Genome Sequences of Three hpAfrica2 Strains of Helicobacter pylori. Genome Announc. 2013 Sep 26;1(5):e00729-13. doi: 10.1128/genomeA.00729-13. PMID:24072860

Kuehn JS, Register KB, Phillips GJ. Draft Genome Sequences for 10 Isolates of the Swine Pathogen Haemophilus parasuis. Genome Announc. 2013 Sep 19;1(5):e00739-13. doi: 10.1128/genomeA.00739-13. PMID:24051319

Liu WB, Yu WB, Gao SH, Ye BC. Genome Sequence of Saccharopolyspora erythraea D, a Hyperproducer of Erythromycin. Genome Announc. 2013 Sep 19;1(5):e00718-13. doi: 10.1128/genomeA.00718-13. PMID:24051314

Krzyzanowska DM, Iwanicki A, Ossowicki A, Obuchowski M, Jafra S. Genome Sequence of Bacillus subtilis MB73/2, a Soil Isolate Inhibiting the Growth of Plant Pathogens Dickeya spp. and Rhizoctonia solani. Genome Announc. 2013 May 16;1(3):e00238-13. doi: 10.1128/genomeA.00238-13. PMID:23682145

Kenney GE, Rosenzweig AC. Genome mining for methanobactins. BMC Biol. 2013 Feb 26;11:17. doi: 10.1186/1741-7007-11-17. PMID:23442874

Sloan DB, Moran NA. The evolution of genomic instability in the obligate endosymbionts of whiteflies. Genome Biol Evol. 2013;5(5):783-93. doi: 10.1093/gbe/evt044. PMID:23542079

Fischer A, Santana-Cruz I, Giglio M, Nadendla S, Drabek E, Vilei EM, Frey J, Jores J. Genome Sequence of Mycoplasma feriruminatoris sp. nov., a Fast-Growing Mycoplasma Species. Genome Announc. 2013 Jan;1(1):e00216-12. doi: 10.1128/genomeA.00216-12. Epub 2013 Feb 21. PMID:23469346

Planet PJ, Rampersaud R, Hymes SR, Whittier S, Della-Latta PA, Narechania A, Daugherty SC, Santana-Cruz I, Desalle R, Ravel J, Ratner AJ. Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1. Genome Announc. 2013 Jan;1(1):e00117-12. doi: 10.1128/genomeA.00117-12. Epub 2013 Jan 31. PMID:23405291

Brown CJ, Sen D, Yano H, Bauer ML, Rogers LM, Van der Auwera GA, Top EM. Diverse broad-host-range plasmids from freshwater carry few accessory genes. Appl Environ Microbiol. 2013 Dec;79(24):7684-95. doi: 10.1128/AEM.02252-13. Epub 2013 Oct 4. PMID:24096417

Tiago I, Maranha A, Mendes V, Alarico S, Moynihan PJ, Clarke AJ, Macedo-Ribeiro S, Pereira PJ, Empadinhas N. Genome sequence of Mycobacterium hassiacum DSM 44199, a rare source of heat-stable mycobacterial proteins. J Bacteriol. 2012 Dec;194(24):7010-1. doi: 10.1128/JB.01880-12. PMID:23209251

Van Lent S, Piet JR, Beeckman D, van der Ende A, Van Nieuwerburgh F, Bavoil P, Myers G, Vanrompay D, Pannekoek Y. Full genome sequences of all nine Chlamydia psittaci genotype reference strains. J Bacteriol. 2012 Dec;194(24):6930-1. doi: 10.1128/JB.01828-12. PMID:23209198

Witzel K, Gwinn-Giglio M, Nadendla S, Shefchek K, Ruppel S. Genome sequence of Enterobacter radicincitans DSM16656(T), a plant growth-promoting endophyte. J Bacteriol. 2012 Oct;194(19):5469. doi: 10.1128/JB.01193-12. PMID:22965092

Biswas S, Biswas I. Complete genome sequence of Streptococcus mutans GS-5, a serotype c strain. J Bacteriol. 2012 Sep;194(17):4787-8. doi: 10.1128/JB.01106-12. PMID:22887682

Hu P, Lang J, Wawrousek K, Yu J, Maness PC, Chen J. Draft genome sequence of Rubrivivax gelatinosus CBS. J Bacteriol. 2012 Jun;194(12):3262. doi: 10.1128/JB.00515-12. PMID:22628496

Domingues S, Harms K, Fricke WF, Johnsen PJ, da Silva GJ, Nielsen KM. Natural transformation facilitates transfer of transposons, integrons and gene cassettes between bacterial species. PLoS Pathog. 2012;8(8):e1002837. doi: 10.1371/journal.ppat.1002837. Epub 2012 Aug 2. PMID:22876180

Pittet V, Ewen E, Bushell BR, Ziola B. Genome sequence of Lactobacillus rhamnosus ATCC 8530. J Bacteriol. 2012 Feb;194(3):726. doi: 10.1128/JB.06430-11. PMID:22247527

Qiao J, Chen L, Li Y, Wang J, Zhang W, Chen S. Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165, associated with honeybees. J Bacteriol. 2012 Nov;194(22):6358-9. doi: 10.1128/JB.01522-12. PMID:23105086

Czajkowski R, van der Wolf JM. Draft genome sequence of the biocontrol strain Serratia plymuthica A30, isolated from rotting potato tuber tissue. J Bacteriol. 2012 Dec;194(24):6999-7000. doi: 10.1128/JB.01699-12. PMID:23209245

Pittet V, Abegunde T, Marfleet T, Haakensen M, Morrow K, Jayaprakash T, Schroeder K, Trost B, Byrns S, Bergsveinson J, Kusalik A, Ziola B. Complete genome sequence of the beer spoilage organism Pediococcus claussenii ATCC BAA-344T. J Bacteriol. 2012 Mar;194(5):1271-2. doi: 10.1128/JB.06759-11. PMID:22328764

Strnad H, Ridl J, Paces J, Kolar M, Vlcek C, Paces V. Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8. J Bacteriol. 2011 Feb;193(3):791-2. doi: 10.1128/JB.01299-10. Epub 2010 Nov 19. PMID:21097610

Takamiya M, Ozen A, Rasmussen M, Alter T, Gilbert T, Ussery DW, Knøchel S. Genome sequences of two stress-tolerant Campylobacter jejuni poultry strains, 305 and DFVF1099. J Bacteriol. 2011 Oct;193(19):5546-7. doi: 10.1128/JB.05753-11. PMID:21914871

Brede DA, Snipen LG, Ussery DW, Nederbragt AJ, Nes IF. Complete genome sequence of the commensal Enterococcus faecalis 62, isolated from a healthy Norwegian infant. J Bacteriol. 2011 May;193(9):2377-8. doi: 10.1128/JB.00183-11. Epub 2011 Mar 11. PMID:21398545

Takamiya M, Ozen A, Rasmussen M, Alter T, Gilbert T, Ussery DW, Knøchel S. Genome Sequence of Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse. Stand Genomic Sci. 2011 Apr 29;4(2):113-22. doi: 10.4056/sigs.1313504. Epub 2011 Apr 25. PMID:21677848

Tocheva EI, Matson EG, Morris DM, Moussavi F, Leadbetter JR, Jensen GJ. Peptidoglycan remodeling and conversion of an inner membrane into an outer membrane during sporulation. Cell. 2011 Sep 2;146(5):799-812. doi: 10.1016/j.cell.2011.07.029. PMID:21884938

de Vries SP, van Hijum SA, Schueler W, Riesbeck K, Hays JP, Hermans PW, Bootsma HJ. Genome analysis of Moraxella catarrhalis strain BBH18, [corrected] a human respiratory tract pathogen. J Bacteriol. 2010 Jul;192(14):3574-83. doi: 10.1128/JB.00121-10. Epub 2010 May 7. PMID:20453089