IGS Genomics Workshop
A short course on the methods and tools used in genomics analysis.
We gratefully thank the National Institute of General Medical Sciences for
funding this project.
The IGS Analysis Engine provides free analysis services for prokaryotic genome annotation, comparative analysis, and transcriptome analysis. The web-based tools Manatee and Sybil are employed for visualization via password-protected accounts.
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Free Prokaryotic Analysis Engine Services
- Whole genome annotation: automated structural and functional annotation of genomes using the IGS Prokaryotic Annotation Pipeline (PMID:21677861) and the Manatee visualization tool. Click here for more information.
- Comparative genomics: automated whole genome comparisons that provide ortholog groups, syntenic regions and visualization of results using Sybil. Please click here to contact us about using this service
- Transcriptome analysis: mapping of RNA-Seq reads to a reference genome and differential expression analysis. Please click here to contact us about using this service.
- Assembly of genomes with CloVR: prepacked assembly pipelines are available as virtual machines with CloVR.
If you have analysis needs beyond what are offered in the free services listed above, please contact us to discuss the needs of your project. We can provide custom analyses (for both prokaryotes and eukaryotes) on a fee-for-service basis.
How to reference use of the IGS Analysis Engine in your publication
We ask that anyone using the IGS Analysis Engine for their work include that information in the
Materials and Methods section and to acknowledge us in the Acknowledgements section. Thank You.